PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G215900.1
Common NameB456_007G215900, LOC105803941
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 510aa    MW: 56802.7 Da    PI: 6.8756
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G215900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17158207155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gorai.007G215900.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                         78*******************......55************************997 PP

2AP243.29.7e-14250300155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ k +g
  Gorai.007G215900.1 250 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTEIEAARAYDRAAIKCNG 300
                         89********.7******...5...334336**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-9158207IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-15158216IPR016177DNA-binding domain
SMARTSM003801.9E-31159221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-17159215IPR001471AP2/ERF domain
CDDcd000183.20E-11159214No hitNo description
PROSITE profilePS5103217.701159215IPR001471AP2/ERF domain
PfamPF008471.0E-9250300IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-17250309IPR016177DNA-binding domain
CDDcd000186.55E-26250308No hitNo description
SMARTSM003805.4E-32251314IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-16251308IPR001471AP2/ERF domain
PROSITE profilePS5103215.646251308IPR001471AP2/ERF domain
PRINTSPR003671.2E-5252263IPR001471AP2/ERF domain
PRINTSPR003671.2E-5290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MWDLNDSPYQ QPRDDESEGC SSQKTSVDGD EDKGKRVGSV SNSSSSAVVV EDGSEEEEGE  60
RVKAALKKRS NKMIFGFPVP GEEVFTENSD PAPVTRQFFP LDQDPEMGAN CVGSGPGFPR  120
AHWVGVKFCQ SEPLPHAKSV EVSQPMKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFSIEDYE DDLKQMCNLT KEEFVHVLRR  240
QSTGFPRGSS KYRGVTLHKC GRWEARMGQL LGKKYVYLGL FDTEIEAARA YDRAAIKCNG  300
KDAVTNFDPR IYDNELNCGE TSGNAGDHNL DLSLGSSTSK QTNLELGGDR QIAMSDQHSL  360
PPEADWQYRE FRSKVNLQQE PCRSDGATHG RSDGYSEAET MQLLSQTHIQ SPASIKSNEM  420
QRYGQFRRPG DNNVFHIPPS SYQIHFPSSS SGGRIGSDLL LSISEQQWQS SPHQMFGNSA  480
ASSGFPSQIR PSSQTWLQKN GFHSLMRPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.11432e-50flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488085492e-50
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5322520.0EU532252.1 Gossypium barbadense clone I5-6 ISSR marker genomic sequence.
GenBankEU5322530.0EU532253.1 Gossypium barbadense clone I6-1 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491847.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotP479271e-139AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0D2SP710.0A0A0D2SP71_G
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-129AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]